other:
Article Title: Genetic modeling of ELP1-associated Sonic hedgehog medulloblastoma identifies MDM2 as a selective therapeutic target.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies NEUN Abcam Cat#ab177487; RRID: AB_2532109 NEUN Cell Signaling Technologies Cat#24307; RRID: AB_2651140 BrdU Abam- Cat#ab6326; RRID: AB_2313786 PAX6 ThermoFisher Scientific Cat#42-6600; RRID: AB_2533534 PAX6 BioLegend Cat#901301; RRID: AB_2565003 PAX6 Abcam Cat#ab195045; RRID: AB_2750924 γH2AX Cell Signaling Technologies Cat#9718; RRID: AB_2118009 RAD51 Abcam Cat#ab133534; RRID: AB_2722613 53BP1 Novus Biologicals Cat#NB100-304; RRID: AB_350221 53BP1 ThermoFisher Scientific Cat#A300-272A; RRID: AB_185520 PRA32 Abcam Cat#ab76420; RRID: AB_1524336 Cleaved Caspase-3 Cell Signaling Technologies Cat#9664; RRID: AB_2070042 p53 Cell Signaling Technologies Cat#2524; RRID: AB_331743 p-p53(S15) Cell Signaling Technologies Cat#9284; RRID: AB_331464 p53 Leica Biosystems Cat#NCL-L-p53-CM5p; RRID: AB_2895247 p21 Abcam Cat#ab109199; RRID: AB_10861551 p27 Invitrogen Cat#MA5-33129; RRID: AB_2811945 p27 Invitrogen Cat#PA5-27188; RRID: AB _2544664 ELP1 Millipore-Sigma Cat#09-871; RRID: AB_10846498 ELP1 CUSABIO Cat#CSB-PA011571LA01HU ELP2 GeneTex Cat#GTX121449; RRID: AB_10731459 ELP3 Cell Signaling Technologies Cat#5728; RRID: AB_11178379 p27 Invitrogen Cat#PA5-27188; RRID: AB_254464 Ki67 Abcam Cat#Ab15580; RRID: AB_443209 Ki67 ThermoFisher Scientific Cat#RM-9106; RRID: AB_2341197 MCM2 Abcam Cat#ab4461; RRID: AB_304470 CDK2 Abcam Cat#ab32147; RRID: AB_726775 p-CDK2 Cell Signaling Technologies Cat2561S; RRID: AB_2078685 Calbindin Swant Cat#300; RRID: AB_10000347 Calbindin Cell Signaling Technologies Cat#2173; RRID: AB_2183553 MDM2 Invitrogen Cat#700555; RRID: AB_2532328 YAP1 Cell Signaling Technologies Cat#14074; RRID: AB_2650491 YAP1 Santa Cruz Cat#sc-101199; RRID: AB_1131430 GAB1 Santa Cruz Cat#sc-133191; RRID: AB_2107855 β-catenin Abcam Cat#ab224803 β-catenin Roche Diagnostics Cat#760-4242; RRID: AB_2861317 RPS27a Invitrogen Cat#PA5-96039; RRID: AB_2807841 BrdU BD Biosciences Cat#347580; RRID: AB_10015219 BrdU Abcam Cat#AB6326; RRID: AB_305426 Anti-rabbit IgG, HRP-linked Cell Signaling Technologies Cat#7074; RRID: AB_2099233 Anti-mouse IgG, HRP-linked Cell Signaling Technologies Cat#7076; RRID: AB_330924 (Continued on next page) ll OPEN ACCESSArticle Cancer Cell 43, 1–18.e1–e11, August 11, 2025 e1
Article Title: NP-ALT, a Liposomal:Peptide Drug, Blocks p27Kip1 Phosphorylation to Induce Oxidative Stress, Necroptosis, and Regression in Therapy-Resistant Breast Cancer Cells
Article Snippet: Antibodies against CDK2 #sc-163, pCDK2T160 #2561S, Cleaved Caspase-3 #9661, LC3B #3868 (Cell Signaling Technology); pRIPK1Ser161 #PA5–105640 (Invitrogen); RIPK1 #Ab125072 (Abcam); Flag #A2220, pRIPK3 ‘#93654 (Cell Signaling Technology rabbit monoclonal), actin #3A2066 (Sigma-Aldrich); p27Kip1 3610241 (BD Biosciences); Ki67 #sc-23900 (Santa Cruz Biotechnology); betagalactosidase #ab128993, estrogen receptor alpha #ab32063, antiDDDDK #ab205606 (Abcam).
Over Expression:Article Title: CRL4 AMBRA1 is a master regulator of D-type cyclins.
Article Snippet: D-type cyclins are central regulators of the cell division cycle and are among the most frequently deregulated therapeutic targets in human cancer, but the mechanisms that regulate their turnover are still being debated.. Here, by combining biochemical and genetics studies in somatic cells, we identify CRL4 (also known as CRL4) as the ubiquitin ligase that targets all three D-type cyclins for degradation.. During development, loss of Ambra1 induces the accumulation of D-type cyclins and retinoblastoma (RB) hyperphosphorylation and hyperproliferation, and results in defects of the nervous system that are reduced by treating pregnant mice with the FDA-approved CDK4 and CDK6 (CDK4/6) inhibitor abemaciclib.
Membrane:Article Title: DNA damage in embryonic neural stem cell determines FTLDs' fate via early-stage neuronal necrosis.
Article Snippet: The BCA method (Pierce BCA Protein Assay Kit; Thermo Fisher Scientific) was used to determine protein concentrations. .. Samples were separated by SDS–PAGE, transferred onto Immobilon-P membrane (Millipore) by a semi-dry method, blocked with 5% milk in TBST (10 mM Tris–HCl, pH 8.0, 150 mM NaCl, and 0.05% Tween-20), and reacted with primary and secondary antibodies diluted in TBST with 0.1% skim milk or Can Get Signal solution (Toyobo) as follows: mouse anti-γH2AX, 1:3,000 (Ser139, #05-636; Millipore); rabbit anti-53BP1, 1:30,000 (NB100-304; Novus Biologicals); rabbit anti–phospho-DNA-PK (pThr2609), 1:5,000 (600-401- 494; Rockland Immunochemicals); rabbit anti–DNA-PK, 1:3,000 (sc-9051; Santa Cruz Biotechnology); rabbit anti–phospho-ChK1 (pSer317), 1:3,000 (#2344S; Cell Signaling Technology); mouse anti-ChK1, 1:3,000 (sc-8408; Santa Cruz Biotechnology); rabbit anti–phospho-ChK2, 1:3,000 (#2688S; Cell Signaling Technology): rabbit anti-ChK2, 1:1,000 (sc-9064; Santa Cruz Biotechnology); mouse anti–phospho-ATM (pSer1981), 1:3,000 (200-301-400; Rockland Immunochemicals); rabbit anti-ATM, 1:1,000 (PS85-100UG; Oncogene Research Products); rabbit anti–phospho-MCM2 (pSer41), 1:3,000 (A300-788A; Bethyl Laboratories Laboratory); goat anti-MCM2, 1:1,000 (sc9839; Santa Cruz Biotechnology); rabbit anti–phospho-MCM3 (pThr719), 1: 3,000 (TA313106; OriGene); rabbit anti-MCM3, 1:1,000 (#4012S; Cell Signaling Technology); rabbit anti–phospho-CDK1 (pThr14), 1:3,000 (ab58509; Abcam); mouse anti-CDK1, 1:3,000 (ab18; Abcam); rabbit anti-phospho CDK2 (pThr160), 1:1,000 (2561S; Cell Signaling Technology); rabbit anti-CDK2, 1:1,000 (ab7954; Abcam); rabbit antiphospho CDK4 (pThr172), 1:1,000 (ab137675; Abcam); rabbit anti-CDK4, 1:1,000 (PA5-27827; Thermo Fisher Scientific); rat anti-HA, 1:2000 (11867423001; Sigma-Aldrich); mouse anti–phospho DAPK1 (pSer308), 1:1,000 (D4941; Sigma-Aldrich); rabbit anti-DAPK1, 1:1,000 (3008S; Cell Signaling Technology); mouse anti-tubulin, 1:3,000 (T8660; Sigma-Aldrich); mouse anti-VCP, 1:1,000 (612182; BD Bioscience); anti-GAPDH, 1:10,000 (MAB374; Millipore); rabbit anti-YAP, 1:1,000 (#14074; Cell Signaling Technology); rabbit anti–phospho TDP43 (Ser409/410), 1:6,000 (TIP-PTD-P02; Cosmo Bio); rabbit anti–phospho TDP43 (Ser403/404), 1:3,000 (TIP-PTD-P05; Cosmo Bio); rabbit antiTDP43, 1:1,000 (ab109535; Abcam); HRP-linked anti-rabbit IgG, 1:3,000 (NA934; GE Healthcare); HRP-linked anti-mouse IgG, 1:3,000 (NA931; GE Healthcare). ..
Article Title: DNA damage in embryonic neural stem cell determines FTLDs’ fate via early-stage neuronal necrosis
Article Snippet: The BCA method (Pierce BCA Protein Assay Kit; Thermo Fisher Scientific) was used to determine protein concentrations. .. Samples were separated by SDS–PAGE, transferred onto Immobilon-P membrane (Millipore) by a semi-dry method, blocked with 5% milk in TBST (10 mM Tris–HCl, pH 8.0, 150 mM NaCl, and 0.05% Tween-20), and reacted with primary and secondary antibodies diluted in TBST with 0.1% skim milk or Can Get Signal solution (Toyobo) as follows: mouse anti-γH2AX, 1:3,000 (Ser139, #05-636; Millipore); rabbit anti-53BP1, 1:30,000 (NB100-304; Novus Biologicals); rabbit anti–phospho-DNA-PK (pThr2609), 1:5,000 (600-401-494; Rockland Immunochemicals); rabbit anti–DNA-PK, 1:3,000 (sc-9051; Santa Cruz Biotechnology); rabbit anti–phospho-ChK1 (pSer317), 1:3,000 (#2344S; Cell Signaling Technology); mouse anti-ChK1, 1:3,000 (sc-8408; Santa Cruz Biotechnology); rabbit anti–phospho-ChK2, 1:3,000 (#2688S; Cell Signaling Technology): rabbit anti-ChK2, 1:1,000 (sc-9064; Santa Cruz Biotechnology); mouse anti–phospho-ATM (pSer1981), 1:3,000 (200-301-400; Rockland Immunochemicals); rabbit anti-ATM, 1:1,000 (PS85-100UG; Oncogene Research Products); rabbit anti–phospho-MCM2 (pSer41), 1:3,000 (A300-788A; Bethyl Laboratories Laboratory); goat anti-MCM2, 1:1,000 (sc-9839; Santa Cruz Biotechnology); rabbit anti–phospho-MCM3 (pThr719), 1:3,000 (TA313106; OriGene); rabbit anti-MCM3, 1:1,000 (#4012S; Cell Signaling Technology); rabbit anti–phospho-CDK1 (pThr14), 1:3,000 (ab58509; Abcam); mouse anti-CDK1, 1:3,000 (ab18; Abcam); rabbit anti-phospho CDK2 (pThr160), 1:1,000 (2561S; Cell Signaling Technology); rabbit anti-CDK2, 1:1,000 (ab7954; Abcam); rabbit anti-phospho CDK4 (pThr172), 1:1,000 (ab137675; Abcam); rabbit anti-CDK4, 1:1,000 (PA5-27827; Thermo Fisher Scientific); rat anti-HA, 1:2000 (11867423001; Sigma-Aldrich); mouse anti–phospho DAPK1 (pSer308), 1:1,000 (D4941; Sigma-Aldrich); rabbit anti-DAPK1, 1:1,000 (3008S; Cell Signaling Technology); mouse anti-tubulin, 1:3,000 (T8660; Sigma-Aldrich); mouse anti-VCP, 1:1,000 (612182; BD Bioscience); anti-GAPDH, 1:10,000 (MAB374; Millipore); rabbit anti-YAP, 1:1,000 (#14074; Cell Signaling Technology); rabbit anti–phospho TDP43 (Ser409/410), 1:6,000 (TIP-PTD-P02; Cosmo Bio); rabbit anti–phospho TDP43 (Ser403/404), 1:3,000 (TIP-PTD-P05; Cosmo Bio); rabbit anti-TDP43, 1:1,000 (ab109535; Abcam); HRP-linked anti-rabbit IgG, 1:3,000 (NA934; GE Healthcare); HRP-linked anti-mouse IgG, 1:3,000 (NA931; GE Healthcare). ..
Bioprocessing:Article Title: CCL113, a novel sulfonamide, induces selective mitotic arrest and apoptosis in HeLa and HepG2 cells.
Article Snippet: Equal amounts (50 μg) of extracted protein were resolved on 10% SDS‐PAGE (ATTO Corporation) and transferred onto PVDF membranes (Trans‐Blot TurboTM Transfer Pack; Bio‐Rad Laboratories, Inc.). .. The membranes were blocked with 5% skim milk for 1 h at room temperature and then probed at 4 ̊C overnight with the following mouse monoclonal antibodies: Anti‐p‐histone H3 (Ser10) (1:1,1000; cat. no. 9706S; Cell Signaling Technology, Inc.), anti‐histone H3 (1:1,1000; cat. no. 14269S; Cell Signaling Technology, Inc.), anti‐cyclin B1 (1:2,000; cat. no. 4135S; Cell Signaling Technology, Inc.), anti‐phosphorylated (p)‐CDK1 (Tyr15) (1:1,1000; cat. no. 9111S; Cell Signaling Technology, Inc.), anti‐p‐CDK1 (Thr14) (1:1,000; cat. no. 2543S; Cell Signaling Technology, Inc.), anti‐p‐CDK1 (Thr161) (1:1,000; cat. no. 9114S; Cell Signaling Technology, Inc.), anti‐CDK1 (1:1,000; cat. no. 9116S; Cell Signaling Technology, Inc.), anti‐cyclin D1 (1:1,000; cat. no. 2922S; Cell Signaling Technology, Inc.), anti‐CDK4 (1:1,000; cat. no. 2906; Cell Signaling Technology, Inc.), anti‐cyclin E1 (1:1,000; cat. no. 4129T; Cell Signaling Technology, Inc.), anti‐Cdc25B (1:1,000; cat. no. 9525S; Cell Signaling Technology, Inc.), anti‐Cdc25C (1:1,000; cat. no. 9522; Cell Signaling Technology, Inc.), anti‐p‐Cdc25C (Thr48) (1:1,000; cat. no. 9527T; Cell Signaling Technology, Inc.), anti‐Plk1 (1:500; cat. no. 4535S; Cell Signaling Technology, Inc.), anti‐p‐Plk1 (Thr210) (1:1,000; cat. no. 5472S; Cell Signaling Technology, Inc.), anti‐CDK2 (1:200; cat. no. sc‐6248; Santa Cruz Biotechnology, Inc.), anti‐p‐CDK2 (Thr160) (1:1,000; cat. no. 2561S; Cell Signaling Technology, Inc.), anti‐ATM (1:1,000; cat. no. 92356S; Cell Signaling Technology, Inc.) anti‐Chk2 (1:1,000; cat. no. 3440T; Cell Signaling Technology, Inc.), anti‐p‐Chk2 (Thr68) (1:1,000; cat. no. 2661S; Cell Signaling Technology, Inc.), anti‐p‐p53 (Ser15) (1:1,000; cat. no. 9286; Cell Signaling Technology, Inc.), anti‐p21 (1:2,000; cat. no. 2946S; Cell Signaling Technology, Inc.), anti‐poly (ADP‐ribose) polymerase (PARP) (1:1,000; cat. no. 9542S; Cell Signaling Technology, Inc.), anti‐β‐actin (1:1,000; cat. no. 3700S; Cell Signaling Technology, Inc.), anti‐cyclin A (1:1,000; cat. no. sc‐239; Santa Cruz Biotechnology, Inc.), anti‐p53 (1:1,000; cat. no. sc‐126; Santa Cruz Biotechnology, Inc.) and p‐ATM (Ser1981) (Cell Signaling Technology, Inc. #4526S, dilution: 1:1,000). .. After washing three times with TBS, the blots were incubated with an HRP‐linked anti‐mouse IgG (1:1,000; cat. no. 7076S; Cell Signaling Technology, Inc.) for 1 h at room temperature.
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